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Katolog > Science > Biology > Bioinformatics > Software > Software Development


For sites that offer resources for developing bioinformatics software, such as APIs, libraries, etc. etc.
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Links:

Bioperl.org
http://www.bioperl.org

Bioperl.org

The Bioperl Project is an international association of developers of open source Perl tools for bioinformatics, genomics and life science research. The Bioperl server provides an online resource for modules, scripts, and web links.
www.bioperl.org
BioJava.org
http://biojava.org/

BioJava.org

The BioJava Project is an open-source project dedicated to providing Java tools for processing biological data.
biojava.org
BioPython.org
http://biopython.org/

BioPython.org

The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology.
biopython.org
AceDB
http://www.acedb.org/

AceDB

A hierarchical database system for displaying genomic data (originally C. elegans), suitable also for displaying other scientific data.
www.acedb.org
BioLisp.org
http://www.biolisp.org

BioLisp.org

BioLisp.org is a public resource supporting scientists who use Lisp to develop intelligent applications in the biological sciences. We collect and disseminate Lisp biocomputing code, and gather pointers to Lisp and other Intelligent BioComputing methods.
www.biolisp.org
Bielefeld University Bioinformatics Server
http://bibiserv.techfak.uni-bielefeld.de/

Bielefeld University Bioinformatics Server

BiBiServ supports Internet-based collaborative research, software development and distance education in bioinformatics.
bibiserv.techfak.uni-bielefeld.de
The Sanger Centre : Informatics Software: Dynamite
http://www.sanger.ac.uk/Software/Dynamite/

The Sanger Centre : Informatics Software: Dynamite

Code generator for writing dynamic programming programs.
www.sanger.ac.uk/Software/Dynamite
AcePerl
http://stein.cshl.org/AcePerl/

AcePerl

OO Interface to AceDB
stein.cshl.org/AcePerl
Boulder.pm
http://www.genome.wi.mit.edu/genome_software/other/boulder.html

Boulder.pm

Simple but powerful data exchange language, suitable for serializing biological data objects.
www.genome.wi.mit.edu/genome_software/other/boulder.html
Bionconductor
http://www.bioconductor.org/

Bionconductor

The Bioconductor project produces an open source software framework that will assist biologists and statisticians working in bioinformatics, with primary emphasis on inference using DNA microarrays, built mostly using R.
www.bioconductor.org
BioQuery
http://www.bioquery.org/

BioQuery

Tools that searches multiple biomedical databases from your desktop.
www.bioquery.org
Biochemical Algorithms Library
http://www.bioinf.uni-sb.de/OK/BALL/

Biochemical Algorithms Library

C++ framework for rapid software prototyping in molecular modeling.
www.bioinf.uni-sb.de/OK/BALL
High Throughput Screening Tools
http://www.htstools.com/

High Throughput Screening Tools

Analytical tools and SQL scripts that solve common problems in drug discovery.
www.htstools.com
Phylogenetic Analysis Library
http://www.cebl.auckland.ac.nz/pal-project/

Phylogenetic Analysis Library

PAL library is a Java toolkit for determining evolutionary trends.
www.cebl.auckland.ac.nz/pal-project
MolTalk
http://www.moltalk.org/

MolTalk

Software development for structural bioinformatics. Runs on Unix, Windows and MacOSX.
www.moltalk.org

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